Lactobacillus sp. JCM number: 2010 <-- ATCC 33198 <-- VPI 1754. Source: Hog small intestine. Biochemistry/Physiology: [5147]. Enzyme electrophoretic profile: [3068]. G+C (mol%): 37.3 (Tm) [3068]. DNA-DNA relatedness: [1672,3068]. Phylogeny: 16S rRNA [2983], 16S rRNA gene (LC800112). DNA typing: Ribotype [4925]. More information: Fermentation of glucose and ribose [4601]; Citrate lyase [4601]; Lactic acid production [5147]; 16S rRNA gene partial sequence of this strain has a high similarity (99.7%) with L. johnsonii. Genomic DNA is available from RIKEN BRC-DNA Bank: JGD07980. |
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Arthrobacter crystallopoietes JCM number: 2522 <-- ATCC 15481 <-- J. C. Ensign. Source: Soil [1199]. Cell wall: Type A3α (L-Lys-L-Ala) [251,375]; glycerol teichoic acid [2883]. Fatty acid: [1267]. Quinone: MK-9(H2) [376]. G+C (mol%): 62.9 (Bd) [382], 64.4 (genome sequence) [12227]. DNA-DNA relatedness: [219]. Phylogeny: 16S rRNA gene (X80738) [3714]. Other taxonomic data: Morphogenesis [1200,1266]. Genome sequence: CP018863, CP018864 (plasmid pLDW-9), CP018865 (plasmid pLDW-10), FNKH00000000. More information: Pigment production [1199]; Cystite formation [4830]. |
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Rhodopseudomonas palustris JCM number: 2524 <-- T. Akiba R1. Source: Soil in rice field [2269]. Biochemistry/Physiology: [2269,3013]. Quinone: Q-10 [2269]. G+C (mol%): 67.6 (Tm) [2269], 65.3 (HPLC) [3013]. DNA-DNA relatedness: [3013]. Phylogeny: 16S rRNA gene (AB598740). Taxonomy: [3013]. More information: Type strain of Rhodopseudomonas rutila [3013]; Photoproduction of molecular hydrogen, nitrogenase [2267]. |
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Cyberlindnera fabianii JCM number: 3601 <-- AJ 5037 <-- NRRL Y-1871. Source: Large fermenter inoculated with Aerobacter aerogenes for the production of butylene glycol [357]. Locality: Korea. Quinone: Q-7 [204]. Enzyme electrophoretic profile: [1002]. Serology: [1848]. G+C (mol%): 44.4 [281], 45.1 [281]. Phylogeny: D1/D2 region of 26S rRNA gene (U73573) [4520], 18S rRNA gene (EF550459), elongation factor 1 gene (EF552545). Other taxonomic data: PMR spectrum of polysaccharide [1756]. Taxonomy: [1884]. Genome sequence: BCGI00000000. More information: Killer yeast (type K13). Genomic DNA is available from RIKEN BRC-DNA Bank: JGD13802. |
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Rhizopus arrhizus var. delemar JCM number: 5560 <-- IAM 6026 <-- IAM R-23-1 <-- T. Inui et al.; IAM; 19-19a (Rhizopus delemar) <-- ATU <-- Fac. Agric., Gifu Univ., Japan; 16. Description: [2035]. Biochemistry/Physiology: [2035]. Taxonomy: [2035]. Application: Amylo mold for industrial alcohol production. |
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Rhizopus arrhizus var. delemar JCM number: 5574 <-- IAM 6255 <-- IAM R-21-9 <-- T. Inui et al., IAM, 26-14b <-- AHU R-132 <-- Y. Takeda. Description: [2035]. Biochemistry/Physiology: [2035]. Taxonomy: [2035]. Application: Amylo mold for industrial alcohol production. |
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Lactococcus lactis subsp. lactis JCM number: 5805 <-- DSM 20481 <-- NCDO 604 <-- S. Orla-Jensen. Biochemistry/Physiology: [1861]. Cell wall: L-Lys-D-Asp [639,2185]. Fatty acid: [2185]. Quinone: [2185]. Serology: Group N. G+C (mol%): 35.8 (Tm) [1853,4038]. DNA-DNA relatedness: [1748,1853,4038]. Phylogeny: 16S rRNA gene (AB100803). Genome sequence: BBSI00000000, BCNL00000000, JXKB00000000, LKLC00000000, PUFC00000000. More information: A multiplex PCR primer [8675]; Induces plasmacytoid dentritic cell activation and interferon-α production [9129]; Activates anti-vial immunity [11647]; Reduces incidence rates of influenza [11648]. Production: γ-Aminobutyric acid (GABA) [7700]. Genomic DNA is available from RIKEN BRC-DNA Bank: JGD12491. |
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Anaerococcus prevotii JCM number: 6508 <-- Y. Benno <-- T. Mitsuoka <-- ATCC 9321 <-- M. Pittman PC1. Source: Human clinical specimen [5052]. Biochemistry/Physiology: [5052]. Cell wall: Lys, D-Glu [5052]. G+C (mol%): 29-33 (HPLC) [5052]. Phylogeny: 16S rRNA gene (AB971807, AF542232, D14139) [5052]. Genome sequence: CP001708, CP001709 (plasmid pAPRE01) [8224], UFSY00000000. More information: Butyrate production from PYG [5052]. |
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Streptomyces acidiscabies JCM number: 7913 <-- ATCC 49003 <-- D. H. Lambert RL-110 <-- R. Loria. Distribution to users in Japan is controlled by the Plant Protection Law. Source: Potato scab [2812]. Biochemistry/Physiology: [2812]. Numerical taxonomy: [3786]. Cell wall: LL-A2pm [2812]. Fatty acid: [3786]. G+C (mol%): 71.1 (Tm) [2958]. DNA-DNA relatedness: [2958,4681]. Phylogeny: 16S rRNA (D63865) [4121], 16S rRNA gene & ITS1 & 23S rRNA gene (AB026220) [7602]. Genome sequence: MUFT00000000. More information: Cutinase production [4738]. Genomic DNA is available from RIKEN BRC-DNA Bank: JGD20027. |
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Bacteroides acidifaciens JCM number: 10556 <-- Y. Miyamoto and K. Itoh A40. Source: Cecum of mice [4685]. Biochemistry/Physiology: G6PDH and 6PGDH activity [4685]. G+C (mol%): 41.4 (HPLC) [4685]. DNA-DNA relatedness: [4685]. Phylogeny: 16S rRNA gene (AB021164, AB510696) [4685,8440,8884], dnaJ (AB619859) [8884], gyrB (AB619897) [8884], hsp60 (AB510667) [8355,8440,8884], recA (AB619935) [8884], rpoB (AB619973) [8884]. Genome sequence: BAIW00000000. More information: _b(Induce Peyer’s patches-dependent production of IgA present in milk [14614]). Genomic DNA is available from RIKEN BRC-DNA Bank: JGD12415. |
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Allomyces sp. JCM number: 11504 <-- Y. Tanabe YT-TT1. Source: Soil from a paddy field (using hemp seed as a bait) [5397]. Locality: Tsukuba, Ibaraki, Japan [5397]. Phylogeny: RPB1 gene (AB077094) [5397,5649]. Other taxonomic data: 28S rRNA gene (LC217992). More information: Single-zoospore culture by Y. Tanabe; CMA or YpSs is recommended for sporangium production; Very weak at low temperature; The strain identity was confirmed based on morphology and the 28S rRNA gene sequence (JCM & Y. Tanabe). |
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Hoylesella buccalis JCM number: 12246 <-- CCUG 15557 <-- NCDO 2354 <-- H. N. Shah HS4. Source: Dental plaque [5555]. Morphology: [5555]. Biochemistry/Physiology: [5555]. Fatty acid: [5555]. Quinone: MK-11, MK-12 [5555]. G+C (mol%): 51 (Tm) [5555]. DNA-DNA relatedness: [5555]. Phylogeny: 16S rRNA gene (AB547676), hsp60 (AB547597) [8355]. Genome sequence: ADEG00000000. More information: _b(Induce Peyer’s patches-dependent production of IgA present in milk [14614]). |
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Companilactobacillus mindensis JCM number: 12532 <-- LMG 21508 <-- M. A. Ehrmann TMW 1.80 <-- R. Müller. Source: Commercial sourdough [5432]. Morphology: [5432]. Biochemistry/Physiology: [5432]. Cell wall: L-Lys-D-Asp [5432]. G+C (mol%): 37.5 (Tm) [5432], 38.2 (genome sequence) [12937]. DNA-DNA relatedness: [5432]. Phylogeny: 16S rRNA gene (AJ313530, LC383831) [5432], dnaK (JF411985) [10595]. DNA typing: RAPD [5432]. Genome sequence: AZEZ00000000, BJZN00000000. More information: L-Lactate production [5432]; Species-specific primer [5432]. |
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Desulfonauticus autotrophicus JCM number: 13028 <-- DSM 4206 <-- R. Cord-Ruwisch strain TeSt. Source: Production water of oil field in Northern Germany near Hamburg [7658]. Biochemistry/Physiology: [7658]. Fatty acid: [7658]. Quinone: MK-6(H2) [7658]. G+C (mol%): 41.3 (HPLC) [7658]. Phylogeny: 16S rRNA gene (FJ194951) [7658]. |
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Arthroderma simii JCM number: 15689 <-- M. Kawasaki KMU4810 <-- B. M. Hemashettar R77/05. Biosafety level 2. Source: Skin of an Indian woman [10344]. Locality: India [10344,10345]. Description: [8035]. Morphology: [10344]. Mating type: + [8374,10344,10345]. Other taxonomic data: ITS (AB430473), topoisomerase II gene (AB430794), actin gene (AB432893), mt cytochrome b gene (AB520834) [10344]. More information: Sexual reproduction between Arthroderma simii and A. vanbreuseghemii [8035]; Mating experiment [8374,10344]. |
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Slackia equolifaciens JCM number: 16059 <-- M. Hattori strain DZE. Source: Human feces [8253]. Biochemistry/Physiology: [8253]. Fatty acid: [8253]. G+C (mol%): 60.8 (HPLC) [8253]. Phylogeny: 16S rRNA gene (AB910741, EU377663) [8253]. Genome sequence: QIBX00000000. More information: Equol production from daidzein [8253]. |
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Aspergillus niger JCM number: 16264 <-- NBRC 105649 <-- NRRL 334 (S. Peterson) <-- C. Thom <-- R. A. Steinberg. Source: Leather. More information: Spore production (http://www.nite.go.jp/nbrc/cultures/support/fungispore.html). Application: Fungus resistance test (JIS Z 2911:2018); JIS L 1921:2015; ISO/FDIS 13125:2012(E); ISO/FDIS 13629-1. |
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Cronobacter dublinensis subsp. lactaridi JCM number: 16468 <-- LMG 23825 <-- A. Lehner E464 <-- C. Iversen. Biosafety level 2. Source: Dried milk production facility [7366]. Biochemistry/Physiology: [7366]. DNA-DNA relatedness: [7366]. Phylogeny: 16S rRNA gene (EF059838) [7366]. Genome sequence: AJKX00000000 [12660]. |
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Lactivibrio alcoholicus JCM number: 17151 <-- Y.-L. Qiu and Y. Sekiguchi 7WAY-8-7. Source: Uplow anaerobic sludge blanket reactor treating high-strength organic wastewater from isomerized sugar production process. Biochemistry/Physiology: [10052]. Fatty acid: [10052]. Polar lipid: [10052]. G+C (mol%): 61.4 (HPLC) [10052]. Phylogeny: 16S rRNA gene (AB558582) [10052]. |
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Oligosphaera ethanolica JCM number: 17152 <-- Y.-L. Qiu and Y. Sekiguchi 8KG-4. Source: Upflow anaerobic sludge blanket reactor treating high-strength organic wastewater from salted vegetable production processes [9360]. Biochemistry/Physiology: [9360]. Fatty acid: [9360]. Quinone: Not detected [9360]. Polar lipid: [9360]. G+C (mol%): 61.1 (HPLC) [9360]. Phylogeny: 16S rRNA gene (AB558581) [9360]. Genome sequence: JAUSVL010000000. |
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Mobilisporobacter senegalensis JCM number: 18753 <-- M. Mbengue Gal1. Source: Shea cake, a waste material from the production of shea butter, Saraya, Senegal [11430]. Biochemistry/Physiology: [11430]. Fatty acid: n-C16:0 [11430]. G+C (mol%): 33.8 (HPLC) [11430]. Phylogeny: 16S rRNA gene (JX999366) [11430]. Genome sequence: RJVG00000000. |
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Lactococcus lactis subsp. lactis JCM number: 20101 <-- IAM 1198 <-- ATU L-31 <-- Y. Ozawa and N. Yano 527. Source: Milk. More information: A multiplex PCR primer [8675]; Induces plasmacytoid dentritic cell activation and interferon-α production [9129]. |
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Aspergillus awamori var. piceus JCM number: 22320 <-- IAM 2351 <-- ATU, Kuro-koji-18-3 <-- K. Sakaguchi et al. R-6822. Source: Kuro-koji (Awamori-koji) (cf. [947]). Locality: Kyan brewery (predecessor of Zuisen brewery), Ryukyu (Okinawa), Japan (cf. [947]). Description: [949]. Taxonomy: [329,949]. Genome sequence: BCGT00000000. More information: Used for production of Awamori, USAKI (Zuisen, Naha, Okinawa) [10603]; Tentatively identified as A. luchuensis based on the β-tubulin gene sequence (Dec. 2017). Production: Amylase [948]. Genomic DNA is available from RIKEN BRC-DNA Bank: JGD13814. |
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Cladosporium sphaerospermum JCM number: 22444 <-- IAM 5059 <-- H. Iizuka F-517. Source: Soil. More information: Spore production (http://www.nite.go.jp/nbrc/cultures/support/fungispore.html); Name changed from Cladosporium cladosporioides to C. sphaerospermum according to JIS Z 2911:2018 (Jun 2022). ITS & 28S seqs are same to those of NBRC 6348. Application: Fungus resistance test (JIS Z 2911:2018); JIS L 1921:2015; ISO/FDIS 13629-1). |
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Cystobasidium iriomotense JCM number: 24574 <-- T. Sugita IPM32-16. Source: Plant leaf [9859]. Locality: Iriomote Island, Okinawa, Japan [9859]. Phylogeny: ITS & 5.8S rRNA gene, D1/D2 region of LSU rRNA gene (AB726384) [9859,12279]. More information: Lipid production from a mixture of glucose and xylose [12279]. |
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Cystobasidium iriomotense JCM number: 24575 <-- T. Sugita IPM46-17. Source: Plant leaf [9859]. Locality: Iriomote Island, Okinawa, Japan [9859]. Phylogeny: ITS & 5.8S rRNA gene, D1/D2 region of LSU rRNA gene (AB726474) [9859,12279]. More information: Lipid production from a mixture of glucose and xylose [12279]. |
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Cystobasidium iriomotense JCM number: 24594 <-- T. Sugita; Meiji Pharm. Univ., Japan; ISM28-8s. Source: Soil [9859]. Locality: Iriomote Island, Okinawa, Japan [9859]. Phylogeny: ITS & 5.8S rRNA gene, D1/D2 region of LSU rRNA gene (AB726571) [9859,12279]. More information: Lipid production from a mixture of glucose and xylose [12279]. |
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Pleomorphochaeta caudata JCM number: 31475 <-- R. Grimaud; Lab. Environ. & Microbiol. (EEM)-IPREM-UMR5254 CNRS, France; SEBR 4223 <-- M. Magot. Source: Production water of an offshore Congolese oil field [11473]. Biochemistry/Physiology: [11473]. Fatty acid: n-C14:0, n-C14:0 DMA, n-C16:0, n-C16:1ω7c [11473]. Polar lipid: PGLs, PLs, GLs, DPG [11473]. G+C (mol%): 28.7 (HPLC) [11473]. Phylogeny: 16S rRNA gene (KU714929) [11473]. |
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"Halanaerobium hydrogeniformans" JCM number: 32553 <-- M. Mormile; Missouri Univ. of Sci. and Technol., USA; SL-HP. Source: Sediments of Soap Lake, WA, USA [11962]. Biochemistry/Physiology: [11692]; Biohydrogen production [11962]. G+C (mol%): 33.1 (genome sequence) [11963]. Phylogeny: 16S rRNA gene (GQ215697) [11962]. Genome sequence: CP002304 [11963]. |
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Halomonas elongata JCM number: 32858 <-- S. Azabou; Natl. Sch. of Eng. of Sfax, Tunisia; J2. Source: Soil sample from Chott el Jerid salt lake, Tunisia [12722]. Biochemistry/Physiology: [12722]. Fatty acid: [12722]. Quinone: Q-9 [12722]. Polar lipid: [12722]. Phylogeny: 16S rRNA gene (LT986355) [12722]. More information: Production of exopolysaccharides [12722]. |
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Halomonas caseinilytica JCM number: 32859 <-- S. Azabou; Natl. Sch. of Eng. of Sfax, Tunisia; K1. Source: Soil sample from Kerhennah solar saltern, Tunisia [12722]. Biochemistry/Physiology: [12722]. Fatty acid: [12722]. Quinone: Q-9 [12722]. Polar lipid: [12722]. Phylogeny: 16S rRNA gene (LT986496) [12722]. More information: Production of exopolysaccharides [12722]. |
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Halomonas smyrnensis JCM number: 32860 <-- S. Azabou; Natl. Sch. of Eng. of Sfax, Tunisia; K2. Source: Soil sample from Kerhennah solar saltern, Tunisia [12722]. Biochemistry/Physiology: [12722]. Fatty acid: [12722]. Quinone: Q-8, Q-9 [12722]. Polar lipid: [12722]. Phylogeny: 16S rRNA gene (LT986497) [12722]. More information: Production of exopolysaccharides [12722]. |
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Halomonas elongata JCM number: 32862 <-- S. Azabou; Natl. Sch. of Eng. of Sfax, Tunisia; K4. Source: Soil sample from Kerhennah solar saltern, Tunisia [12722]. Biochemistry/Physiology: [12722]. Fatty acid: [12722]. Quinone: Q-9 [12722]. Polar lipid: [12722]. Phylogeny: 16S rRNA gene (LS398137) [12722]. More information: Production of exopolysaccharides [12722]. |
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"Lutibacter atrimaris" JCM number: 32877 <-- L. Villanueva; R. Neth. Inst. for Sea Res., Netherlands; B1. Source: Water from the Black Sea at a depth of 2000 m [13039,14854]. Morphology: [14854]. Biochemistry/Physiology: [14854]. Fatty acid: [13039]; Production of glycine beta-hydroxy fatty acid amides [13039]. Quinone: [14854]. G+C (mol%): 30.2 (genome sequence) [14854]. Genome sequence: JAAZUI000000000 [14854]. |
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Novisyntrophococcus fermenticellae JCM number: 33939 <-- Z. Xu; Jiangnan Univ., China; JN500902. Source: Mud in a fermentation cellar used continously over 30 years for Chinese strong-flavor Baijiu production in Sichuan, China [13698]. Morphology: [13698,13699]. Biochemistry/Physiology: [13698]. Fatty acid: [13698]. G+C (mol%): 43.5 (Genome sequence) [13698]. Phylogeny: 16S rRNA gene (MG753793) [13698]. Genome sequence: CP076458 [13698]. |
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Aestuariispira ectoiniformans JCM number: 34041 <-- J. Y. Kang; KRIBB, South Korea; SWCN16. Source: Seawater at Yellow Sea coast (Buan-gun), South Korea [13970]. Morphology: [13970]. Biochemistry/Physiology: [13970]. Fatty acid: [13970]. Quinone: Q-10 [13970]. Polar lipid: PE, PG, GL, PL, AL Ls [13970]. G+C (mol%): 57.1 (genome sequence) [13970]. Phylogeny: 16S rRNA gene (MW035314) [13970]. Other taxonomic data: Average amino acid identity, average nucleotide identity, genome-to-genome distances [13970]. Genome sequence: CP062788 [13970]. More information: Ectoine production [13970]. |
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Blautia liquoris JCM number: 34225 <-- L. Lu; Luzhou Pinchuang Technol. Co., Ltd, China; LZLJ-3. Source: Mud fermentation cellar which has been used for the production of Chinese strong-flavour liquor for over 100 years [13501]. Biochemistry/Physiology: [13501]. Fatty acid: [13501]. G+C (mol%): 42.1 (genome sequence) [13501]. Phylogeny: 16S rRNA gene (MT525338) [13501]. Other taxonomic data: Average amino acid identity, average nucleotide identity, percentage of conserved proteins [13501]. Genome sequence: CP063304 [13501]. |
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Lentilactobacillus laojiaonis JCM number: 34630 <-- Q. Zao; IMCAS, China; IM3328. Source: Mud in a fermentation cellar for the production of Chinese liquor [13703]. Biochemistry/Physiology: [13703]. Cell wall: [13703]. Fatty acid: [13703]. G+C (mol%): 33 (genome sequence) [13703]. Phylogeny: 16S rRNA gene (MN396677) [13703]. Other taxonomic data: Average nucleotide identity, genome-to-genome distances [13703]. Genome sequence: CP085278 [13703]. |
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Streptomyces beigongshangae JCM number: 34712 <-- Q. Ren; Beijing Technol. & Bus. Univ., China; REN17. Distribution to users in Japan is controlled by the Plant Protection Law. Source: Fermented grains of Baijiu in Sichuan, PR China [14420]. Morphology: [14420]. Biochemistry/Physiology: [14420]. Cell wall: LL-A2pm [14420]. Fatty acid: [14420]. Quinone: MK-9(H2), MK-9(H4), MK-9(H6), MK-9(H8) [14420]. Polar lipid: PE, PI, PL, GLs, Ls [14420]. G+C (mol%): 71.9 (genome sequence) [14420]. Phylogeny: 16S rRNA gene (MZ292113), phylogenomic analysis [14420]. Other taxonomic data: Average amino acid identity, average nucleotide identity, genome-to-genome distances [14420]. Genome sequence: JAHKJW000000000 [14420]. More information: Production of ginsenosides Rg3 and C-K [14420]. Production: β-Glucosidase [14420]. |
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"Lelliottia steviae" JCM number: 34938 <-- O. Li; Zhejiang Sci-Tech Univ., China; LST-1. Distribution to users in Japan is controlled by the Plant Protection Law. Source: Stevia rebaudiana Bertoni from the stevia planting and production base in Dongtai City, Yancheng City, Jiangsu Province, China [14127]. Morphology: [14127]. Biochemistry/Physiology: [14127]. Fatty acid: [14127]. Quinone: MK-8, Q-8 [14127]. Polar lipid: PE, PG, APL, PLs, L [14127]. G+C (mol%): 55.02 (genome sequence) [14127]. Phylogeny: 16S rRNA gene (MZ497264), multilocus sequence analysis (atpD, infB, gyrB, rpoB) [14127]. Other taxonomic data: Average nucleotide identity, genome-to-genome distances [14127]. Genome sequence: CP063663 [14127]. |
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Clostridium moutaii JCM number: 36530 <-- C. Jiang; IMCAS, China; MT-5. Distribution to users in Japan is controlled by the Plant Protection Law. Source: Pit mud used for the production of sauce-flavour Chinese baijiu [14628]. Biochemistry/Physiology: [14628]. Fatty acid: [14628]. Polar lipid: [14628]. G+C (mol%): 32.74 (genome sequence) [14628]. Phylogeny: 16S rRNA gene (PQ142655) [14628]. Other taxonomic data: Average amino acid identity, average nucleotide identity, genome-to-genome distances [14628]. Genome sequence: JBGEWD000000000 [14628]. |
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Clostridium lapidicellarium JCM number: 36532 <-- C. Jiang; IMCAS, China; MT-113. Distribution to users in Japan is controlled by the Plant Protection Law. Source: Pit mud in a stone cellar used for the production of sauce-flavour Chinese baijiu [14628]. Biochemistry/Physiology: [14628]. Fatty acid: [14628]. Polar lipid: [14628]. G+C (mol%): 35.84 (genome sequence) [14628]. Phylogeny: 16S rRNA gene (PQ142654) [14628]. Other taxonomic data: Average amino acid identity, average nucleotide identity, genome-to-genome distances [14628]. Genome sequence: JBGFFE000000000 [14628]. |
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Lipomyces starkeyi JCM number: 39235 <-- Y. Takayama; Teikyo Univ., Japan; Ls75 <-- JCM 5995. Source: Lipomyces starkeyi JCM 5995 after UV irradiation [13800]. More information: Crossable with JCM 39236 (strain Ls100) [13800]. Lipid production [13800]. Reference: DOI: 10.1002/yea.3671. |
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Lipomyces starkeyi JCM number: 39236 <-- Y. Takayama; Teikyo Univ., Japan; Ls100 <-- JCM 5995. Source: Lipomyces starkeyi JCM 5995 after UV irradiation [13800]. More information: Self-sterile strain [13800]. Crossable with JCM 39235 (strain Ls75) [13800]. Lipid production [13800]. Reference: DOI: 10.1002/yea.3671. |
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