Summary of assembly and annotation
 
 Scientific name   JCM no.
 Candida boidinii   9604
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   21,341,943
Sequence coverage   116
# of contigs   145
Total length (contigs)   19,128,883
N50 (contigs)   415,963
# of scaffolds   32
Total scaffold length (with gaps)   19,377,211
% gaps   1.3
N50 (scaffold)   3,291,297
GC%   30.4
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Hansenula polymorpha
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,053
# of predicted transcript models   6,053
Average transcript length (bp)   1,882
Average coding length (bp)   1,629
Average protein length (aa)   543
Average number of exons per gene model   1.5
Average exon size (bp)   1,073
Average intron size (bp)   481
# of non-coding RNA   750
# of functionally annotated genes trembl   4,212
# of functionally annotated genes sprot   2,645
CEGMA complete (%)   95.16
CEGMA partial (%)   96.37

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