Summary of assembly and annotation
 
 Scientific name   JCM no.
 Penicillium roqueforti   22842
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   30,515,076
Sequence coverage   232
# of contigs   117
Total length (contigs)   27,036,971
N50 (contigs)   546,428
# of scaffolds   16
Total scaffold length (with gaps)   27,123,058
% gaps   0.3
N50 (scaffold)   5,360,957
GC%   48.1
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Penicillium chrysogenum
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,598
# of predicted transcript models   10,598
Average transcript length (bp)   1,547
Average coding length (bp)   1,392
Average protein length (aa)   464
Average number of exons per gene model   3.0
Average exon size (bp)   466
Average intron size (bp)   76
# of non-coding RNA   411
# of functionally annotated genes trembl   10,150
# of functionally annotated genes sprot   2,894
CEGMA complete (%)   95.56
CEGMA partial (%)   97.58

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