|
|
|
Genome assembly: |
ALLPATHS-LG (ver. 52488) |
|
|
Genome assembly ver. 001 |
Estimated genome size |
|
17,736,304 |
Sequence coverage |
|
173 |
# of contigs |
|
168 |
Total length (contigs) |
|
14,753,667 |
N50 (contigs) |
|
223,418 |
# of scaffolds |
|
32 |
Total scaffold length (with gaps) |
|
15,086,366 |
% gaps |
|
2.2 |
N50 (scaffold) |
|
1,590,249 |
GC% |
|
36.2 |
|
|
Gene prediction: |
|
MAKER annotation pipeline (release 2.31.8) |
|
|
Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21) |
|
|
Reference used: Saccharomyces cerevisiae |
|
|
tRNAscan-SE (version 1.23) |
|
Infernal cmscan (version 1.1.1) |
|
|
Database used: Rfam (Release 12.0) |
Functional annotaion: |
|
Sma3S: 2013-09-01 |
|
|
Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11) |
|
|
Gene prediction & funcational annotation ver. 001 |
# of predicted gene models |
|
6,063 |
# of predicted transcript models |
|
6,063 |
Average transcript length (bp) |
|
1,648 |
Average coding length (bp) |
|
1,488 |
Average protein length (aa) |
|
496 |
Average number of exons per gene model |
|
1.2 |
Average exon size (bp) |
|
1,253 |
Average intron size (bp) |
|
289 |
# of non-coding RNA |
|
545 |
# of functionally annotated genes trembl |
|
4,692 |
# of functionally annotated genes sprot |
|
2,661 |
CEGMA complete (%) |
|
94.76 |
CEGMA partial (%) |
|
95.97 |
|