Summary of assembly and annotation
 
 Scientific name   JCM no.
 Ogataea methanolica   10240
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   17,736,304
Sequence coverage   173
# of contigs   168
Total length (contigs)   14,753,667
N50 (contigs)   223,418
# of scaffolds   32
Total scaffold length (with gaps)   15,086,366
% gaps   2.2
N50 (scaffold)   1,590,249
GC%   36.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Saccharomyces cerevisiae
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,063
# of predicted transcript models   6,063
Average transcript length (bp)   1,648
Average coding length (bp)   1,488
Average protein length (aa)   496
Average number of exons per gene model   1.2
Average exon size (bp)   1,253
Average intron size (bp)   289
# of non-coding RNA   545
# of functionally annotated genes trembl   4,692
# of functionally annotated genes sprot   2,661
CEGMA complete (%)   94.76
CEGMA partial (%)   95.97