JCM Catalogue

Phocaeicola vulgatus (Eggerth and Gagnon 1933) García-López et al. 2020

Taxonomy in NCBI database: Bacteria; Pseudomonadati; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae.

5826^T <-- ATCC 8482 <-- A. H. Eggerth.
Accessioned in 1986.
=ATCC 8482 =BCRC 12903 =CCUG 4940 =CIP 103714 =DSM 1447 =IAM 14520 =IFO 14291 =LMG 7956 =NBRC 14291 =NCTC 11154.
Bacteroides vulgatus.
Type strain [596,1857,12724,12970].
Medium: 14; Temperature: 37°C; Anaerobic; Rehydration fluid: 663.

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Source: Human feces [4007].
Biochemistry/Physiology: [1857].
Fatty acid: [3521].
Enzyme electrophoretic profile: [3863,4443].
G+C (mol%): 41.0 (Tm) [4007].
DNA-DNA relatedness: [4007].
Phylogeny: 16S rRNA gene (AB050111, AB510712, M58762), [3513,3888,8440,8884], dnaJ (AB619895) [8884], gyrB (AB619933) [8884], hsp60 (AB510694) [8355,8440,8884], recA (AB619971) [8884], rpoB (AB620009) [8884].
Taxonomy: [081,1857,12724,12970].
Genome sequence: CP000139 [8487].
More information: Association with Japanese cedar pollinosis [7496].
Application: Sterility test [081], (Japanese Pharmacopoeia, 14 ed.).
NCBI Assembly ID: GCA_000012825 (GenBank), GCF_000012825 (RefSeq).
BacDive ID: 1601.
NCBI Taxonomy ID: 821.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD06281.

Publication(s) using this strain [A04168, A04177, A04184, A05029, B05106, A07009, A07171, A07179, A07180, A07269, A08012, A08019, A08278, A09256, A10013, A10209, A10221, A10249, B11190, B11209, A11238, A11280, A11289, A11311, B11344, A12295, A12422, A13543, A13551, A13553, A14118, A14528, A15541, A15552, A15589, A16074, A17070, A17155, A17549, A18008, A18069, A18143, A18166, A20079, A20177, A20446, A20487, A20568, A21209, A21211, A21463, A22109, A22122, A22477, A22496, A22521, A23150, A23493, A24048, A24131, A24386].

Patent publication(s) using this strain [WO2010/098103, 2015-164416, AU2015215750, WO2019/156251, 2021-193895, 2021-180619, 2022-52715, 2022-103708, 2023-116876, 7279983, 2023-161983, P2024-80650A].

Related information on delivery / use of the strain

Biosafety level	1	-
Terms and conditions	Not applicable	-
Export control ⁽¹⁾	No	-
Distribution control in Japan ⁽²⁾	No	-
Genetically modified microorganism	No	-
Technical information	-	-
Additional information	-	-

(1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
(2) in complying with the Plant Protection Law of Japan

Delivery category

Domestic	A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas	A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)

Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.

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