JCM Catalogue


Paracoccus denitrificans (Beijerinck and Minkman 1910) Davis 1969

Taxonomy in NCBI database: Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae.

21484T <-- IAM 15021 <-- NCCB 22021 <-- LMD 22.21 <-- M. W. Beijerinck.
Accessioned in 2007.
=ATCC 17741 =DSM 413 =IAM 15021 =LMD 22.21 =NBRC 102528 =NCCB 22021.
Type strain [596].
Medium: 22;  Temperature: 25°C; Rehydration fluid: 663.   more information +  Full / Short version of the cataloguepage top

Source: Garden soil, Delft, the Netherlands.
Phylogeny: 16S rRNA gene (Y16927).
Taxonomy: [6481,6828].
NCBI Taxonomy ID: 266.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 12662.

Publication(s) using this strain [A17416, A17582].
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not imposed
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)

Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.

6892 <-- T. Urakami TK 0801.
Accessioned in 1987.
Paracoccus denitrificans.
Medium: 22;  Temperature: 30°C; Rehydration fluid: 663.   more information +

Biochemistry/Physiology: [3015,3046].
Fatty acid: n-C18:1, i-C16:0, (3OH-C10:0, 3OH-C14:0) [2423,3015].
Quinone: Q-10 [2416].
G+C (mol%): 66.9 (HPLC) [3046], 67 [3015].
DNA-DNA relatedness: [2876,3015,3046].
Phylogeny: 16S rRNA gene (AB598745).
Taxonomy: [6481,6828].
More information: This strain was transferred from ATCC to Dr. Urakami as the type strain of Paracoccus denitrificans but it was identified as P. pantotrophus [6828]. Therefore, its history is uncertain.

Publication(s) using this strain [A06238, A07177, A07227, A10241].
Patent publication(s) using this strain [JP2007-021487A, JP2007-160236A, JP2008-023488A, JP2008-149233A, JP2008-253271A, JP2009-195831A, JP2010-041954A, JP2011-104564A, JP2012-143706A, JP2012-157360A, JP2012-192359A, JP2013-039571A, JP2014-166191A, US20160304915].
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not imposed
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)

Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.

20620 <-- IAM 12479.
Accessioned in 2007.
=IAM 12479 =IFO 16712 =NBRC 16712.
Paracoccus denitrificans.
Medium: 22;  Temperature: 25°C; Rehydration fluid: 663.   more information +

Source: Soil.
Phylogeny: 16S rRNA gene (D13480, Y17512) [6828].
Taxonomy: [6481,6828].
More information: This strain was transferred from ATCC to IAM as the type strain of Paracoccus denitrificans but it was identified as P. pantotrophus [6828]. Therefore, its history is uncertain.

Publication(s) using this strain [A10009, A12064].
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not imposed
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)

This product was produced by the IAM Culture Collection (IAM) and transferred to JCM in 2007. Viability and purity assays were performed by IAM at the time of production. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.

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