JCM Catalogue

Bacteroides melaninogenicus subsp. intermedius Holdeman and Moore 1970
Taxonomy in NCBI database: Bacteria; Bacteroidota; Bacteroidia; Bacteroidales; Bacteroidaceae.
11150 <-- K. Okamoto <-- ATCC 25611 <-- L. V. Holdeman VPI 4197 <-- S. Finegold B422.
Accessioned in 2001.
=ATCC 25611 =BCRC 14416 =CCUG 24041 =CIP 103682 =DSM 20706 =JCM 12248 =NCTC 13070 =VPI 4197.
Bacteroides intermedius.
Bacteroides melaninogenicus subsp. intermedius.
Type strain [596,2989,3077].
Medium: 14;  Temperature: 37°C; Anaerobic; Rehydration fluid: 663.   more information +  Full / Short version of the cataloguepage top

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Source: Empyema.
Biochemistry/Physiology: [3077,4868].
Fatty acid: [3521].
G+C (mol%): 44.2 (HPLC) [4868].
DNA-DNA relatedness: [2989,4725,4868].
Phylogeny: 16S rRNA gene (AB547687, L16468) [3513], hsp60 (AB547609) [8355].
Taxonomy: [2989,3077].
Genome sequence: AUTZ00000000, CP019300 (chromosome I), CP019301 (chromosome II), JAEZ00000000, UGTO00000000.
More information: Peptidase, lipase, malate dehydrogenase and glutamate dehydrogenase [4868].
NCBI Assembly ID: GCA_001953955 (GenBank), GCF_001953955 (RefSeq).
BacDive ID: 12531.
NCBI Taxonomy ID: 28131.
Publication(s) using this strain [B04146, A10221, A10303, A18129, A21507].
Patent publication(s) using this strain [2015-193619, 2021-90416, 2022-191975].
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
12248 <-- CCUG 24041 <-- DSM 20706 <-- ATCC 25611 <-- L. V. Holdeman VPI 4197 <-- S. Finegold B422.
Accessioned in 2003.
=ATCC 25611 =BCRC 14416 =CCUG 24041 =CIP 103682 =DSM 20706 =JCM 11150 =NCTC 13070 =VPI 4197.
Bacteroides intermedius.
Bacteroides melaninogenicus subsp. intermedius.
Type strain [596,2989,3077].
Medium: 14;  Temperature: 37°C; Anaerobic; Rehydration fluid: 663.   more information +
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open link in new window
Source: Empyema.
Biochemistry/Physiology: [3077,4868].
Fatty acid: [3521].
G+C (mol%): 44.2 (HPLC) [4868].
DNA-DNA relatedness: [2989,4725,4868].
Phylogeny: 16S rRNA gene (AB547686, AB547687, L16468) [3513], hsp60 (AB547608, AB547609) [8355].
Taxonomy: [2989,3077].
Genome sequence: AUTZ00000000, CP019300 (chromosome I), CP019301 (chromosome II), JAEZ00000000, UGTO00000000.
More information: Peptidase, lipase, malate dehydrogenase and glutamate dehydrogenase [4868].
NCBI Assembly ID: GCA_001953955 (GenBank), GCF_001953955 (RefSeq).
NCBI Taxonomy ID: 28131.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD06611.
Publication(s) using this strain [A08012, A08248, B09120, B10106, A10221, A10299, A12035, A12273, A17538, A18001].
Patent publication(s) using this strain [JP2007-308378A, 2015-164416, AU2015215750, WO2022-102612].
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
6322 <-- Y. Benno <-- T. Mitsuoka <-- NCTC 9336 <-- L. P. Garrod.
Accessioned in 1987.
=ATCC 33563 =CCUG 9560 =CIP 104835 =CIP 105552 =DSM 13386 =JCM 12250 =NCTC 9336 =VPI 8944.
Bacteroides intermedius.
Bacteroides melaninogenicus subsp. intermedius.
Type strain [4868].
Medium: 14;  Temperature: 37°C; Anaerobic; Rehydration fluid: 663.   more information +
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Source: Human gingival crevice.
Biochemistry/Physiology: [4868].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 42.5 (HPLC) [4868].
DNA-DNA relatedness: [4725,4868].
Phylogeny: 16S rRNA gene (AB547697), hsp60 (AB547621) [8355].
Genome sequence: AFPX00000000, UGTN00000000.
More information: Peptidase, lipase, malate dehydrogenase and glutamate dehydrogenase [4868].
NCBI Assembly ID: GCA_900454985 (GenBank), GCF_900454985 (RefSeq).
NCBI Taxonomy ID: 28133.
Publication(s) using this strain [B04146, A04177, B05153, A10221].
Patent publication(s) using this strain [JP2007-308378A, JP2011-020935A, JP2013-014521A, 2016-094378].
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not applicable
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
12250 <-- CCUG 9560 <-- NCTC 9336 <-- L. P. Garrod.
Accessioned in 2003.
=ATCC 33563 =CCUG 9560 =CIP 104835 =CIP 105552 =DSM 13386 =JCM 6322 =KCTC 15081 =NCTC 9336 =VPI 8944.
Bacteroides intermedius.
Bacteroides melaninogenicus subsp. intermedius.
Type strain [4868].
Medium: 14;  Temperature: 37°C; Anaerobic; Rehydration fluid: 663.   more information +
open link in new window
open link in new window
Source: Human gingival crevice.
Biochemistry/Physiology: [4868].
Enzyme electrophoretic profile: [3863].
G+C (mol%): 42.5 (HPLC) [4868].
DNA-DNA relatedness: [4725,4868].
Phylogeny: 16S rRNA gene (AB547696), hsp60 (AB547620) [8355].
Genome sequence: AFPX00000000, UGTN00000000.
More information: Peptidase, lipase, malate dehydrogenase and glutamate dehydrogenase [4868].
NCBI Assembly ID: GCA_900454985 (GenBank), GCF_900454985 (RefSeq).
BacDive ID: 12537.
NCBI Taxonomy ID: 28133.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD06612.
Publication(s) using this strain [B09120, B10106, A10221, A15117, A20588].
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not applicable
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
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