JCM Catalogue

Nocardia otitidiscaviarum Snijders 1924
Taxonomy in NCBI database: Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae.
3377T <-- IFM 0239 <-- IFO 14405 <-- ATCC 14629 <-- R. E. Gordon <-- NCTC 1934 <-- E. Snijders.
Accessioned in 1985.
=ATCC 14629 =CBS 262.39 =CCM 2779 =CCUG 10075 =CGMCC 4.1168 =CIP 104514 =DSM 43242 =IFM 0239 =IFO 14405 =IID 5214 =IMSNU 21221 =JCM 3393 =KCTC 9960 =NBRC 14405 =NCIMB 12084 =NCTC 1934 =VKM Ac-869.
"Nocardia caviae".
Type strain [596].
Medium: 26, 43, 57;  Temperature: 28°C; Rehydration fluid: 656.   more information +  Full / Short version of the cataloguepage top
Biochemistry/Physiology: [220].
Numerical taxonomy: [987,2327,2866,2964,3471].
Cell wall: N-Glycolyl Mur [276,4176].
Fatty acid: [2072].
Quinone: MK-8(H4) [391], MK-8(II,III-H4, ω-cycl) [2384].
Polar lipid: [751].
G+C (mol%): 67 (UV) [1154], 71.7 (Tm) [1979,2074], 69.0 (genome sequence) [10622,12227].
DNA-DNA relatedness: [1154].
Phylogeny: 16S rRNA (M59056), 16S rRNA gene (AF430067, DQ659912, GQ376191, X80599, X80611) [3943,3951,5533,8968], gyrB (AB075570, AB450798, GQ496100).
Other taxonomic data: Mycolic acid [720,1114,4767]; Ribosomal protein [3947]; rRNA-DNA relatedness [1979,2074].
Genome sequence: BAGD00000000 [10622], UGRY00000000.
NCBI Assembly ID: GCA_900454305 (GenBank), GCF_900454305 (RefSeq).
BacDive ID: 10679.
NCBI Taxonomy ID: 1823.
Publication(s) using this strain [A06229].
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
3393T <-- DSM 43242 <-- NCTC 1934 <-- E. P. Snijders.
Accessioned in 1986.
=ATCC 14629 =CBS 262.39 =CCM 2779 =CCUG 10075 =CGMCC 4.1168 =CIP 104514 =DSM 43242 =IFM 0239 =IFO 14405 =IID 5214 =IMSNU 21221 =JCM 3377 =KCTC 9960 =NBRC 14405 =NCIMB 12084 =NCTC 1934 =VKM Ac-869.
"Nocardia caviae".
Type strain [596].
Medium: 26, 43, 57;  Temperature: 28°C; Rehydration fluid: 656.   more information +
Biochemistry/Physiology: [220].
Numerical taxonomy: [987,2327,2866,2964,3471].
Cell wall: N-Glycolyl Mur [276,4176].
Fatty acid: [2072].
Quinone: MK-8(H4) [391], MK-8(II,III-H4, ω-cycl) [2384].
Polar lipid: [751].
G+C (mol%): 67 (UV) [1154], 71.7 (Tm) [1979,2074], 69.0 (genome sequence) [10622,12227].
DNA-DNA relatedness: [1154].
Phylogeny: 16S rRNA (M59056), 16S rRNA gene (AF430067, DQ659912, GQ376191, X80599, X80611) [3943,3951,5533,8968], gyrB (AB075570, AB450798, GQ496100).
Other taxonomic data: Mycolic acid [720,1114,4767]; Ribosomal protein [3947]; rRNA-DNA relatedness [1979,2074].
Genome sequence: BAGD00000000 [10622], UGRY00000000.
NCBI Assembly ID: GCA_900454305 (GenBank), GCF_900454305 (RefSeq).
NCBI Taxonomy ID: 1823.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15858 <-- IFM 0167 <-- I. Uesaka ITK 73.
Accessioned in 2009.
=IFM 0167.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
BacDive ID: 161658.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15867 <-- IFM 0181 <-- I. Uesaka ITK 166.
Accessioned in 2009.
=IFM 0181.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
BacDive ID: 161667.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15868 <-- IFM 0192 <-- I. Uesaka ITK 180.
Accessioned in 2009.
=IFM 0192.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
BacDive ID: 161668.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15883 <-- IFM 0313 <-- M. Tsukamura 23112 <-- R. E. Gordon R547.
Accessioned in 2009.
=IFM 0313.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
Numerical taxonomy: [1155].
BacDive ID: 161682.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15884 <-- IFM 0314 <-- M. Tsukamura 23113 <-- R. E. Gordon R617.
Accessioned in 2009.
=IFM 0314.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
Numerical taxonomy: [1155].
BacDive ID: 161683.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15885 <-- IFM 0315 <-- M. Tsukamura 23114 <-- R. E. Gordon R1291.
Accessioned in 2009.
=IFM 0315.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
Numerical taxonomy: [1155].
BacDive ID: 161684.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15886 <-- IFM 0316 <-- M. Tsukamura 23111 <-- R. E. Gordon R416.
Accessioned in 2009.
=IFM 0316.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
Numerical taxonomy: [1155].
BacDive ID: 161685.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15887 <-- IFM 0317 <-- M. Tsukamura 23115 <-- R. E. Gordon R1315.
Accessioned in 2009.
=IFM 0317.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
BacDive ID: 161686.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15888 <-- IFM 0318 <-- M. Tsukamura 23116 <-- R. E. Gordon R1316.
Accessioned in 2009.
=IFM 0318.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
BacDive ID: 161687.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
15892 <-- IFM 0362 <-- Nambu Tokushukai Hosp., Okinawa Pref., Japan.
Accessioned in 2009.
=IFM 0362.
Medium: 43;  Temperature: 28°C; Rehydration fluid: 656.   more information +
Source: Leg ulcer.
BacDive ID: 161689.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
7792 <-- IFM 0273 <-- H. Hachisuka.
Accessioned in 1990.
=CIP 104836 =IFM 0273.
Nocardia otitidiscaviarum.
Medium: 57;  Temperature: 37°C; Rehydration fluid: 656.   more information +
Source: Cutaneous nocardiosis of a male [2896,2966].
Biochemistry/Physiology: [2896,2966].
Cell wall: meso-A2pm; Ara, Gal [2896,2966].
Fatty acid: [2896].
Quinone: MK-8(H4) [2896].
Other taxonomic data: Mycolic acid [2896].
Production: Toxic substance HS-6 [2896].
BacDive ID: 138108.
 Related information on delivery / use of the strain
Biosafety level 2
Terms and conditions Not applicable -
Export control (1) No -
Distribution control in Japan (2) No -
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
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