Summary of assembly and annotation
 
 Scientific name   JCM no.
 Xanthophyllomyces dendrorhous   9681
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   28,323,225
Sequence coverage   182
# of contigs   121
Total length (contigs)   19,002,522
N50 (contigs)   456,863
# of scaffolds   43
Total scaffold length (with gaps)   19,108,479
% gaps   0.6
N50 (scaffold)   1,120,801
GC%   47.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,242
# of predicted transcript models   6,242
Average transcript length (bp)   2,356
Average coding length (bp)   1,611
Average protein length (aa)   537
Average number of exons per gene model   7.6
Average exon size (bp)   212
Average intron size (bp)   112
# of non-coding RNA   596
# of functionally annotated genes trembl   6,070
# of functionally annotated genes sprot   1,736
CEGMA complete (%)   92.74
CEGMA partial (%)   95.56