Summary of assembly and annotation
 
 Scientific name   JCM no.
 Candida succiphila   9445
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   13,583,000
Sequence coverage   187
# of contigs   64
Total length (contigs)   12,080,302
N50 (contigs)   546,973
# of scaffolds   22
Total scaffold length (with gaps)   12,149,879
% gaps   0.6
N50 (scaffold)   1,360,171
GC%   40.9
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Hansenula polymorpha
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,455
# of predicted transcript models   5,455
Average transcript length (bp)   1,667
Average coding length (bp)   1,587
Average protein length (aa)   529
Average number of exons per gene model   1.3
Average exon size (bp)   1,266
Average intron size (bp)   304
# of non-coding RNA   405
# of functionally annotated genes trembl   4,037
# of functionally annotated genes sprot   2,545
CEGMA complete (%)   95.16
CEGMA partial (%)   95.56

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