Summary of assembly and annotation
 
 Scientific name   JCM no.
 Beverwykella pulmonaria   9230
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   51,468,400
Sequence coverage   80
# of contigs   666
Total length (contigs)   44,309,600
N50 (contigs)   217,175
# of scaffolds   50
Total scaffold length (with gaps)   45,966,240
% gaps   3.6
N50 (scaffold)   3,010,262
GC%   48.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Neurospora crassa
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   14,834
# of predicted transcript models   14,834
Average transcript length (bp)   1,535
Average coding length (bp)   1,360
Average protein length (aa)   453
Average number of exons per gene model   2.7
Average exon size (bp)   501
Average intron size (bp)   98
# of non-coding RNA   371
# of functionally annotated genes trembl   11,150
# of functionally annotated genes sprot   3,032
CEGMA complete (%)   97.18
CEGMA partial (%)   98.79