Summary of assembly and annotation
 
 Scientific name   JCM no.
 Trichosporon inkin   9195
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   21,860,187
Sequence coverage   252
# of contigs   178
Total length (contigs)   20,305,743
N50 (contigs)   261,162
# of scaffolds   18
Total scaffold length (with gaps)   20,346,071
% gaps   0.2
N50 (scaffold)   2,740,716
GC%   62.7
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,277
# of predicted transcript models   7,277
Average transcript length (bp)   2,206
Average coding length (bp)   1,527
Average protein length (aa)   509
Average number of exons per gene model   3.7
Average exon size (bp)   410
Average intron size (bp)   76
# of non-coding RNA   435
# of functionally annotated genes trembl   6,315
# of functionally annotated genes sprot   1,786
CEGMA complete (%)   90.73
CEGMA partial (%)   93.55

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