Summary of assembly and annotation
 
 Scientific name   JCM no.
 Saccharomycopsis malanga   7620
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   21,060,018
Sequence coverage   134
# of contigs   231
Total length (contigs)   16,571,048
N50 (contigs)   168,358
# of scaffolds   44
Total scaffold length (with gaps)   16,719,687
% gaps   0.9
N50 (scaffold)   1,632,271
GC%   37.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Ascoidea rubescens
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,280
# of predicted transcript models   6,280
Average transcript length (bp)   1,544
Average coding length (bp)   1,493
Average protein length (aa)   497
Average number of exons per gene model   1.3
Average exon size (bp)   1,187
Average intron size (bp)   187
# of non-coding RNA   602
# of functionally annotated genes trembl   3,800
# of functionally annotated genes sprot   2,760
CEGMA complete (%)   95.56
CEGMA partial (%)   96.37

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