Summary of assembly and annotation
 
 Scientific name   JCM no.
 Alloascoidea hylecoeti   7604
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   29,891,468
Sequence coverage   94
# of contigs   346
Total length (contigs)   24,435,252
N50 (contigs)   224,558
# of scaffolds   136
Total scaffold length (with gaps)   24,815,695
% gaps   1.5
N50 (scaffold)   949,999
GC%   31.1
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Ascoidea rubescens
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,003
# of predicted transcript models   10,003
Average transcript length (bp)   1,478
Average coding length (bp)   1,304
Average protein length (aa)   434
Average number of exons per gene model   2.0
Average exon size (bp)   646
Average intron size (bp)   166
# of non-coding RNA   1,474
# of functionally annotated genes trembl   5,035
# of functionally annotated genes sprot   3,544
CEGMA complete (%)   95.16
CEGMA partial (%)   97.18

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