Summary of assembly and annotation
 
 Scientific name   JCM no.
 Ascoidea asiatica   7603
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   29,646,624
Sequence coverage   91
# of contigs   265
Total length (contigs)   19,989,822
N50 (contigs)   232,021
# of scaffolds   71
Total scaffold length (with gaps)   20,313,720
% gaps   1.6
N50 (scaffold)   1,153,196
GC%   24.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Ascoidea rubescens
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,694
# of predicted transcript models   7,694
Average transcript length (bp)   1,856
Average coding length (bp)   1,520
Average protein length (aa)   506
Average number of exons per gene model   2.0
Average exon size (bp)   770
Average intron size (bp)   335
# of non-coding RNA   1,142
# of functionally annotated genes trembl   3,810
# of functionally annotated genes sprot   2,714
CEGMA complete (%)   94.35
CEGMA partial (%)   95.56

Copyright © 2022 Microbe Division (JCM) - All Rights Reserved