Summary of assembly and annotation
 
 Scientific name   JCM no.
 Cystobasidiopsis lactophilus   7595
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   23,060,324
Sequence coverage   188
# of contigs   55
Total length (contigs)   22,129,962
N50 (contigs)   1,453,215
# of scaffolds   19
Total scaffold length (with gaps)   22,180,604
% gaps   0.2
N50 (scaffold)   3,806,995
GC%   56.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Rhodosporidium toruloides
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   9,424
# of predicted transcript models   9,424
Average transcript length (bp)   1,754
Average coding length (bp)   1,365
Average protein length (aa)   455
Average number of exons per gene model   6.4
Average exon size (bp)   212
Average intron size (bp)   70
# of non-coding RNA   102
# of functionally annotated genes trembl   4,768
# of functionally annotated genes sprot   1,825
CEGMA complete (%)   92.34
CEGMA partial (%)   95.16

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