Summary of assembly and annotation
 
 Scientific name   JCM no.
 Cyberlindnera fabianii   3601
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   13,777,538
Sequence coverage   170
# of contigs   55
Total length (contigs)   12,238,005
N50 (contigs)   410,820
# of scaffolds   12
Total scaffold length (with gaps)   12,303,847
% gaps   0.5
N50 (scaffold)   1,964,508
GC%   44.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cyberlindnera jadinii
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,874
# of predicted transcript models   5,874
Average transcript length (bp)   1,506
Average coding length (bp)   1,447
Average protein length (aa)   482
Average number of exons per gene model   1.3
Average exon size (bp)   1,139
Average intron size (bp)   209
# of non-coding RNA   376
# of functionally annotated genes trembl   5,729
# of functionally annotated genes sprot   3,056
CEGMA complete (%)   95.16
CEGMA partial (%)   95.16

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