Summary of assembly and annotation
 
 Scientific name   JCM no.
 Trichosporon coremiiforme   2938
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   53,782,139
Sequence coverage   74
# of contigs   308
Total length (contigs)   42,267,084
N50 (contigs)   426,699
# of scaffolds   190
Total scaffold length (with gaps)   42,354,861
% gaps   0.2
N50 (scaffold)   1,468,191
GC%   59.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   14,886
# of predicted transcript models   14,886
Average transcript length (bp)   2,061
Average coding length (bp)   1,448
Average protein length (aa)   482
Average number of exons per gene model   3.5
Average exon size (bp)   411
Average intron size (bp)   84
# of non-coding RNA   1,484
# of functionally annotated genes trembl   13,512
# of functionally annotated genes sprot   3,400
CEGMA complete (%)   91.53
CEGMA partial (%)   94.35