Summary of assembly and annotation
 
 Scientific name   JCM no.
 Cryptococcus sp.   24511
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   31,843,447
Sequence coverage   72
# of contigs   234
Total length (contigs)   27,885,035
N50 (contigs)   257,002
# of scaffolds   55
Total scaffold length (with gaps)   28,180,937
% gaps   1.1
N50 (scaffold)   1,281,587
GC%   58.5
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,192
# of predicted transcript models   10,192
Average transcript length (bp)   1,983
Average coding length (bp)   1,497
Average protein length (aa)   499
Average number of exons per gene model   6.0
Average exon size (bp)   247
Average intron size (bp)   95
# of non-coding RNA   314
# of functionally annotated genes trembl   7,333
# of functionally annotated genes sprot   2,072
CEGMA complete (%)   93.15
CEGMA partial (%)   95.56

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