Summary of assembly and annotation
 
 Scientific name   JCM no.
 Actinomucor elegans   22485
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   40,648,684
Sequence coverage   215
# of contigs   495
Total length (contigs)   33,780,393
N50 (contigs)   195,194
# of scaffolds   192
Total scaffold length (with gaps)   34,171,183
% gaps   1.1
N50 (scaffold)   748,976
GC%   35.9
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Rhizopus oryzae
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   12,653
# of predicted transcript models   12,653
Average transcript length (bp)   1,458
Average coding length (bp)   1,222
Average protein length (aa)   407
Average number of exons per gene model   4.3
Average exon size (bp)   282
Average intron size (bp)   69
# of non-coding RNA   1,728
# of functionally annotated genes trembl   10,114
# of functionally annotated genes sprot   3,023
CEGMA complete (%)   97.58
CEGMA partial (%)   98.39

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