Summary of assembly and annotation
 
 Scientific name   JCM no.
 Mucor circinelloides   22480
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   80,394,427
Sequence coverage   121
# of contigs   1,296
Total length (contigs)   34,957,244
N50 (contigs)   61,216
# of scaffolds   401
Total scaffold length (with gaps)   36,616,466
% gaps   4.5
N50 (scaffold)   197,059
GC%   37.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Rhizopus oryzae
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   14,158
# of predicted transcript models   14,158
Average transcript length (bp)   1,461
Average coding length (bp)   1,228
Average protein length (aa)   409
Average number of exons per gene model   3.9
Average exon size (bp)   318
Average intron size (bp)   79
# of non-coding RNA   4,076
# of functionally annotated genes trembl   12,874
# of functionally annotated genes sprot   3,109
CEGMA complete (%)   96.37
CEGMA partial (%)   97.98

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