Summary of assembly and annotation
 
 Scientific name   JCM no.
 Meira nashicola   18503
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   20,632,079
Sequence coverage   290
# of contigs   100
Total length (contigs)   17,967,722
N50 (contigs)   1,024,193
# of scaffolds   58
Total scaffold length (with gaps)   18,015,688
% gaps   0.3
N50 (scaffold)   3,834,998
GC%   40.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Malassezia globosa
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,787
# of predicted transcript models   7,787
Average transcript length (bp)   1,684
Average coding length (bp)   1,598
Average protein length (aa)   532
Average number of exons per gene model   1.6
Average exon size (bp)   1,027
Average intron size (bp)   145
# of non-coding RNA   486
# of functionally annotated genes trembl   4,936
# of functionally annotated genes sprot   1,814
CEGMA complete (%)   93.55
CEGMA partial (%)   94.35