Summary of assembly and annotation
 
 Scientific name   JCM no.
 Wickerhamia fluorescens   1821
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   17,641,750
Sequence coverage   145
# of contigs   111
Total length (contigs)   13,032,290
N50 (contigs)   312,802
# of scaffolds   20
Total scaffold length (with gaps)   13,178,500
% gaps   1.1
N50 (scaffold)   1,643,810
GC%   37.3
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Lodderomyces elongisporus
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,676
# of predicted transcript models   5,676
Average transcript length (bp)   1,529
Average coding length (bp)   1,478
Average protein length (aa)   492
Average number of exons per gene model   1.1
Average exon size (bp)   1,285
Average intron size (bp)   315
# of non-coding RNA   549
# of functionally annotated genes trembl   4,596
# of functionally annotated genes sprot   2,724
CEGMA complete (%)   94.35
CEGMA partial (%)   94.76