Summary of assembly and annotation
 
 Scientific name   JCM no.
 Yarrowia deformans   1694
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   29,060,250
Sequence coverage   76
# of contigs   174
Total length (contigs)   20,706,549
N50 (contigs)   264,734
# of scaffolds   44
Total scaffold length (with gaps)   20,877,144
% gaps   0.8
N50 (scaffold)   1,186,048
GC%   50.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Yarrowia lipolytica
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,704
# of predicted transcript models   6,704
Average transcript length (bp)   1,544
Average coding length (bp)   1,421
Average protein length (aa)   473
Average number of exons per gene model   1.3
Average exon size (bp)   1,094
Average intron size (bp)   398
# of non-coding RNA   1,026
# of functionally annotated genes trembl   6,106
# of functionally annotated genes sprot   2,742
CEGMA complete (%)   95.97
CEGMA partial (%)   95.97

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