Summary of assembly and annotation
 
 Scientific name   JCM no.
 Candida intermedia   1607
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   14,560,676
Sequence coverage   156
# of contigs   54
Total length (contigs)   12,953,306
N50 (contigs)   954,748
# of scaffolds   12
Total scaffold length (with gaps)   13,027,022
% gaps   0.6
N50 (scaffold)   2,029,102
GC%   43.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Metschnikowia bicuspidata
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,823
# of predicted transcript models   5,823
Average transcript length (bp)   1,535
Average coding length (bp)   1,479
Average protein length (aa)   493
Average number of exons per gene model   1.1
Average exon size (bp)   1,289
Average intron size (bp)   365
# of non-coding RNA   378
# of functionally annotated genes trembl   5,111
# of functionally annotated genes sprot   2,827
CEGMA complete (%)   95.16
CEGMA partial (%)   95.97

Copyright © 2022 Microbe Division (JCM) - All Rights Reserved