Summary of assembly and annotation
 
 Scientific name   JCM no.
 Cutaneotrichosporon curvatus   1532
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   21,699,141
Sequence coverage   225
# of contigs   182
Total length (contigs)   18,121,713
N50 (contigs)   197,970
# of scaffolds   75
Total scaffold length (with gaps)   18,637,344
% gaps   2.8
N50 (scaffold)   571,590
GC%   57.9
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,994
# of predicted transcript models   6,994
Average transcript length (bp)   1,759
Average coding length (bp)   1,551
Average protein length (aa)   517
Average number of exons per gene model   4.3
Average exon size (bp)   362
Average intron size (bp)   62
# of non-coding RNA   560
# of functionally annotated genes trembl   5,881
# of functionally annotated genes sprot   1,845
CEGMA complete (%)   87.50
CEGMA partial (%)   93.55

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