Summary of assembly and annotation
 
 Scientific name   JCM no.
 Cutaneotrichosporon cutaneum   1462
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   33,436,539
Sequence coverage   163
# of contigs   423
Total length (contigs)   22,759,700
N50 (contigs)   110,385
# of scaffolds   98
Total scaffold length (with gaps)   23,155,501
% gaps   1.7
N50 (scaffold)   744,446
GC%   62.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   9,244
# of predicted transcript models   9,244
Average transcript length (bp)   1,646
Average coding length (bp)   1,427
Average protein length (aa)   475
Average number of exons per gene model   3.9
Average exon size (bp)   370
Average intron size (bp)   75
# of non-coding RNA   811
# of functionally annotated genes trembl   7,516
# of functionally annotated genes sprot   1,925
CEGMA complete (%)   91.94
CEGMA partial (%)   94.35