Summary of assembly and annotation
 
 Scientific name   JCM no.
 Cryptococcus tepidarius   11965
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   27,712,276
Sequence coverage   151
# of contigs   414
Total length (contigs)   22,173,297
N50 (contigs)   89,032
# of scaffolds   44
Total scaffold length (with gaps)   22,370,450
% gaps   0.9
N50 (scaffold)   1,186,041
GC%   44.7
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,341
# of predicted transcript models   7,341
Average transcript length (bp)   2,112
Average coding length (bp)   1,607
Average protein length (aa)   535
Average number of exons per gene model   5.9
Average exon size (bp)   272
Average intron size (bp)   102
# of non-coding RNA   714
# of functionally annotated genes trembl   5,614
# of functionally annotated genes sprot   1,845
CEGMA complete (%)   93.15
CEGMA partial (%)   94.76

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