Summary of assembly and annotation
 
 Scientific name   JCM no.
 Albophoma yamanashiensis   11844
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   37,616,211
Sequence coverage   218
# of contigs   218
Total length (contigs)   31,111,553
N50 (contigs)   567,446
# of scaffolds   66
Total scaffold length (with gaps)   31,390,562
% gaps   0.9
N50 (scaffold)   4,519,820
GC%   56.7
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Neurospora crassa
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   10,464
# of predicted transcript models   10,464
Average transcript length (bp)   1,561
Average coding length (bp)   1,394
Average protein length (aa)   464
Average number of exons per gene model   2.7
Average exon size (bp)   521
Average intron size (bp)   96
# of non-coding RNA   409
# of functionally annotated genes trembl   8,980
# of functionally annotated genes sprot   2,704
CEGMA complete (%)   95.16
CEGMA partial (%)   96.77

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