Summary of assembly and annotation
 
 Scientific name   JCM no.
 Erythrobasidium yunnanense   10687
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   24,099,867
Sequence coverage   175
# of contigs   35
Total length (contigs)   20,885,358
N50 (contigs)   1,363,828
# of scaffolds   11
Total scaffold length (with gaps)   20,930,538
% gaps   0.2
N50 (scaffold)   2,343,223
GC%   51.0
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Rhodosporidium toruloides
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   9,088
# of predicted transcript models   9,088
Average transcript length (bp)   1,768
Average coding length (bp)   1,476
Average protein length (aa)   492
Average number of exons per gene model   5.2
Average exon size (bp)   285
Average intron size (bp)   68
# of non-coding RNA   103
# of functionally annotated genes trembl   4,761
# of functionally annotated genes sprot   1,865
CEGMA complete (%)   95.16
CEGMA partial (%)   96.77