Summary of assembly and annotation
 
 Scientific name   JCM no.
 Rhodotorula toruloides   10020
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   25,592,165
Sequence coverage   92
# of contigs   127
Total length (contigs)   20,399,055
N50 (contigs)   567,200
# of scaffolds   88
Total scaffold length (with gaps)   20,492,593
% gaps   0.5
N50 (scaffold)   976,034
GC%   61.8
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Rhodosporidium toruloides
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,047
# of predicted transcript models   8,047
Average transcript length (bp)   2,072
Average coding length (bp)   1,639
Average protein length (aa)   546
Average number of exons per gene model   6.4
Average exon size (bp)   257
Average intron size (bp)   79
# of non-coding RNA   562
# of functionally annotated genes trembl   7,924
# of functionally annotated genes sprot   1,947
CEGMA complete (%)   94.76
CEGMA partial (%)   95.16