JCM Catalogue

Clavibacter sepedonicus (Spieckermann and Kotthoff 1914) Nouioui et al. 2018

Taxonomy in NCBI database: Bacteria; Actinomycetota; Actinomycetes; Micrococcales; Microbacteriaceae.

9667T <-- ICMP 2535 <-- D. W. Dye CB5 <-- ICPB CS101 <-- H. N. Racicot C1.
Accessioned in 1995.
=ATCC 33113 =CCUG 23908 =CECT 4886 =CFBP 2049 =CIP 104844 =DSM 20744 =ICMP 2535 =ICPB CS101 =KACC 20123 =KCCM 41286 =LMG 2889 =NCPPB 2137 =VKM Ac-1405.
Clavibacter michiganensis subsp. sepedonicus.
Corynebacterium michiganense subsp. sepedonicum.
Corynebacterium sepedonicum.
Type strain [596,1093,11929,12227,12325].
Medium: 26;  Temperature: 30°C; Rehydration fluid: 656.

Source: Potato (Solanum tuberosum), Canada.
Biochemistry/Physiology: [1093].
Cell wall: A2bu [1093]; sugars (Gal, Man, Rha) [1093]; D- & L-A2bu [4358].
Quinone: MK-9 [4358].
G+C (mol%): 72.4 [11929].
Phylogeny: 16S rRNA gene (AM410694, U09764) [5925,9310], gyrB (AM410848), rpoB (AM410874), recA (AM410822), ppk (AM410796) [9310], MLSA [11929].
Other taxonomic data: Average nucleotide identity [11929], genome-to-genome distances [12227].
Taxonomy: [1093,11929,12227].
Genome sequence: AM849034, AM849035 (plasmid pCS1), AM849036 (plasmid pCSL1) [8488].
More information: Causes ringrot of tuber.
NCBI Assembly ID: GCA_000069225 (GenBank), GCF_000069225 (RefSeq).
BacDive ID: 7294.
NCBI Taxonomy ID: 31964.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD12233.

 Related information on delivery / use of the strain
Biosafety level 1 -
Terms and conditions Not applicable -
Export control (1) Controlled
Distribution control in Japan (2) Controlled
Genetically modified microorganism No -
Technical information - -
Additional information - -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas - -

Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
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