JCM Catalogue

Xylanimonas pachnodae (Cazemier et al. 2004) Heo et al. 2020

Taxonomy in NCBI database: Bacteria; Actinobacteria; Actinomycetia; Micrococcales; Promicromonosporaceae.

13526T <-- DSM 12657 <-- A. E. Cazemier VPCX2.
Accessioned in 2005.
=DSM 12657 =NBRC 107786 =NCCB 100020.
Xylanimicrobium pachnodae.
Promicromonospora pachnodae.
Type strain [6230,6304,12225,12908].
Medium: 28, 475;  Temperature: 28°C; Rehydration fluid: 656.

Source: Hindgut of larvae of the scarab beetle (Pachnoda marginata) [6230].
Biochemistry/Physiology: [6230,6304,12908].
Cell wall: Type A4α (L-Lys-L-Ser-D-Glu) [6230]; Rha, Gal, Glc [6304].
Fatty acid: [6230], a-C15:0, n-C16:0, n-C14:0 [12908].
Quinone: MK-9(H4) [6304].
Polar lipid: PG, DPG, PI [6304], DPG, PLs, GPLs [12908].
G+C (mol%): 70 [6230], 71.9 (genome sequence) [12227].
Phylogeny: 16S rRNA gene (AF105422) [6230,6304].
Taxonomy: [6304,12908].
Genome sequence: BCWJ00000000.
More information: Xylanase and CMC-ase activity [6230]; Xylanase-encoding genes [9414]; β-1,4-Endoglucanase-encoding gene [9415].
NCBI Assembly ID: GCA_001314005 (GenBank).
BacDive ID: 12610.
NCBI Taxonomy ID: 101489.
Genomic DNA is available from RIKEN BRC-DNA Bank: JGD 12700.

Publication(s) using this strain [A18079].
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not applicable
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)

Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
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