JCM Catalogue

Agromonas oligotrophica Ohta and Hattori 1985
1494 <-- H. Ohta <-- T. Hattori S58.
Accessioned in 1982.
=ATCC 43045 =CCBAU 101025 =DSM 12412 =LMG 10732 =NCIMB 12151.
Agromonas oligotrophica.
Category: Bacteria.
Type strain [449,9431,10694].
Medium: 23, 24;  Temperature: 30°C; Rehydration fluid: 663.   more information +  Full / Short version of the cataloguepage top
Source: Paddy field soil in Miyagi Pref., Japan.
Biochemistry/Physiology: [449].
Fatty acid: [449].
Quinone: Q-10 [449].
G+C (mol%): 64.7 (Tm) [449], 65.1 (Tm) [9431].
DNA-DNA relatedness: [9431].
Phylogeny: 16S rRNA gene (D78366, JQ619230) [7946,9431], recA (JQ619231), atpD (JQ619232), glnII (JQ619233) [9431].
Taxonomy: [449,9431].
Genome sequence: AP012603.
More information: Oligotroph [449,450]; Nitrogen fixing activity [449]; Growth characteristics [2550]; Respiratory characteristics [2551]; Degradation of ferulic acid [7947].
NCBI Assembly ID: GCA_000344805 (GenBank), GCF_000344805 (RefSeq).
BacDive ID: 1784.
NCBI Taxonomy ID: 44255.
Publication(s) using this strain [A11286, A13412].
Patent publication(s) using this strain [JP2008-253271A, JP2012-157360A, JP2014-166191A, US20160304915].
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not applicable
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
1495 <-- H. Ohta <-- T. Hattori S42.
Accessioned in 1982.
=NCIMB 12152.
Agromonas oligotrophica.
Category: Bacteria.
Medium: 23, 24;  Temperature: 30°C; Rehydration fluid: 663.   more information +
Source: Paddy field soil in Miyagi Pref., Japan.
Fatty acid: [449].
Quinone: Q-10 [449].
G+C (mol%): 63.9 (Tm) [449].
Phylogeny: 16S rRNA gene (LC379119).
More information: Oligotroph [449,450]; Nitrogen fixing activity [449].
BacDive ID: 161555.
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not applicable
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control but note that the authenticity has not yet been checked by gene sequencing. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
1496 <-- H. Ohta <-- T. Hattori S55.
Accessioned in 1982.
Agromonas oligotrophica.
Category: Bacteria.
Medium: 23, 24;  Temperature: 30°C; Rehydration fluid: 663.   more information +
Source: Paddy field soil in Miyagi Pref., Japan.
Fatty acid: [449].
Quinone: Q-10 [449].
G+C (mol%): 64.7 (Tm) [449].
Phylogeny: 16S rRNA gene (LC379120).
More information: Oligotroph [449,450]; Nitrogen fixing activity [449].
BacDive ID: 161557.
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not applicable
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control but note that the authenticity has not yet been checked by gene sequencing. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
1497 <-- H. Ohta <-- T. Hattori S72.
Accessioned in 1982.
Agromonas oligotrophica.
Category: Bacteria.
Medium: 23, 24;  Temperature: 30°C; Rehydration fluid: 663.   more information +
Source: Paddy field soil in Miyagi Pref., Japan [450].
Fatty acid: [449].
Quinone: Q-10 [449].
G+C (mol%): 64.9 (Tm) [449].
Phylogeny: 16S rRNA gene (LC379121).
More information: Oligotroph [449,450]; Nitrogen fixing activity [449].
BacDive ID: 161559.
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not applicable
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control but note that the authenticity has not yet been checked by gene sequencing. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
1498 <-- H. Ohta <-- T. Hattori S73.
Accessioned in 1982.
Agromonas oligotrophica.
Category: Bacteria.
Medium: 23, 24;  Temperature: 30°C; Rehydration fluid: 663.   more information +
Source: Paddy field soil in Miyagi Pref., Japan [450].
Fatty acid: [449].
Quinone: Q-10 [449].
G+C (mol%): 64.7 (Tm) [449].
Phylogeny: 16S rRNA gene (LC379122).
More information: Oligotroph [449,450]; Nitrogen fixing activity [449].
BacDive ID: 161560.
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not applicable
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control but note that the authenticity has not yet been checked by gene sequencing. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
18005 <-- K. Minamisawa S58 <-- T. Hattori.
Accessioned in 2011.
Agromonas oligotrophica.
Category: Bacteria.
Medium: 346;  Temperature: 30°C; Rehydration fluid: 663.   more information +
More information: Derived from strain S58 (= JCM 1494T). Mutation may occur because of repeated subculture.
BacDive ID: 162162.
 Related information on delivery / use of the strain
Biosafety level 1
Terms and conditions Not applicable
Export control (1) No
Distribution control in Japan (2) No
Genetically modified microorganism No
Technical information -
Additional information -
 (1) in complying with the Foreign Exchange and Foreign Trade Control Law of Japan
 (2) in complying with the Plant Protection Law of Japan

 Delivery category
Domestic A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Overseas A (Freeze-dried or L-dried culture) or C (Actively growing culture on request)
Viability and purity assays of this product were performed at the time of production as part of quality control. The authenticity of the culture was confirmed by analyzing an appropriate gene sequence, e.g., the 16S rRNA gene for prokaryotes, the D1/D2 region of LSU rRNA gene, the ITS region of the nuclear rRNA operon, etc. for eukaryotes. The characteristics and/or functions of the strain appearing in the catalogue are based on information from the corresponding literature and JCM does not guarantee them.
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