Summary of assembly and annotation
 
 Scientific name   JCM no.
 Apiotrichum gamsii   9941
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   27,212,792
Sequence coverage   200
# of contigs   178
Total length (contigs)   24,565,321
N50 (contigs)   263,767
# of scaffolds   29
Total scaffold length (with gaps)   24,609,388
% gaps   0.2
N50 (scaffold)   3,284,570
GC%   61.1
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,551
# of predicted transcript models   8,551
Average transcript length (bp)   1,795
Average coding length (bp)   1,519
Average protein length (aa)   506
Average number of exons per gene model   3.8
Average exon size (bp)   403
Average intron size (bp)   98
# of non-coding RNA   665
# of functionally annotated genes trembl   6,366
# of functionally annotated genes sprot   1,969
CEGMA complete (%)   92.74
CEGMA partial (%)   93.95

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