Summary of assembly and annotation
 
 Scientific name   JCM no.
 Trichosporon ovoides   9940
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   48,496,966
Sequence coverage   123
# of contigs   226
Total length (contigs)   40,277,103
N50 (contigs)   533,928
# of scaffolds   89
Total scaffold length (with gaps)   40,329,712
% gaps   0.1
N50 (scaffold)   2,824,845
GC%   60.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   14,474
# of predicted transcript models   14,474
Average transcript length (bp)   2,144
Average coding length (bp)   1,517
Average protein length (aa)   505
Average number of exons per gene model   3.7
Average exon size (bp)   409
Average intron size (bp)   79
# of non-coding RNA   947
# of functionally annotated genes trembl   12,316
# of functionally annotated genes sprot   3,478
CEGMA complete (%)   94.35
CEGMA partial (%)   95.97