Summary of assembly and annotation
 
 Scientific name   JCM no.
 Cutaneotrichosporon mucoides   9939
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   57,107,854
Sequence coverage   94
# of contigs   255
Total length (contigs)   40,720,136
N50 (contigs)   298,878
# of scaffolds   84
Total scaffold length (with gaps)   40,783,511
% gaps   0.2
N50 (scaffold)   1,668,497
GC%   60.1
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   14,964
# of predicted transcript models   14,964
Average transcript length (bp)   1,818
Average coding length (bp)   1,519
Average protein length (aa)   506
Average number of exons per gene model   4.4
Average exon size (bp)   346
Average intron size (bp)   87
# of non-coding RNA   934
# of functionally annotated genes trembl   12,438
# of functionally annotated genes sprot   3,411
CEGMA complete (%)   93.95
CEGMA partial (%)   95.97

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