Summary of assembly and annotation
 
 Scientific name   JCM no.
 Apiotrichum montevideense   9937
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   28,057,198
Sequence coverage   186
# of contigs   149
Total length (contigs)   24,794,316
N50 (contigs)   510,995
# of scaffolds   61
Total scaffold length (with gaps)   24,872,216
% gaps   0.3
N50 (scaffold)   1,972,470
GC%   58.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   8,247
# of predicted transcript models   8,247
Average transcript length (bp)   1,740
Average coding length (bp)   1,489
Average protein length (aa)   496
Average number of exons per gene model   4.3
Average exon size (bp)   347
Average intron size (bp)   75
# of non-coding RNA   585
# of functionally annotated genes trembl   6,142
# of functionally annotated genes sprot   1,898
CEGMA complete (%)   93.95
CEGMA partial (%)   94.76