Summary of assembly and annotation
 
 Scientific name   JCM no.
 Scheffersomyces lignosum   9837
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   19,658,031
Sequence coverage   125
# of contigs   73
Total length (contigs)   16,454,577
N50 (contigs)   619,226
# of scaffolds   19
Total scaffold length (with gaps)   16,592,489
% gaps   0.8
N50 (scaffold)   1,946,329
GC%   41.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Pichia stipitis
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   6,330
# of predicted transcript models   6,330
Average transcript length (bp)   1,616
Average coding length (bp)   1,502
Average protein length (aa)   500
Average number of exons per gene model   1.2
Average exon size (bp)   1,272
Average intron size (bp)   612
# of non-coding RNA   426
# of functionally annotated genes trembl   5,615
# of functionally annotated genes sprot   3,069
CEGMA complete (%)   95.56
CEGMA partial (%)   95.56