Summary of assembly and annotation
 
 Scientific name   JCM no.
 Nakazawaea peltata   9829
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   12,245,642
Sequence coverage   206
# of contigs   34
Total length (contigs)   11,611,714
N50 (contigs)   648,860
# of scaffolds   11
Total scaffold length (with gaps)   11,653,826
% gaps   0.4
N50 (scaffold)   1,221,263
GC%   40.5
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Wickerhamomyces anomalus
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,620
# of predicted transcript models   5,620
Average transcript length (bp)   1,546
Average coding length (bp)   1,485
Average protein length (aa)   495
Average number of exons per gene model   1.2
Average exon size (bp)   1,206
Average intron size (bp)   246
# of non-coding RNA   365
# of functionally annotated genes trembl   4,001
# of functionally annotated genes sprot   2,729
CEGMA complete (%)   94.76
CEGMA partial (%)   95.16