Summary of assembly and annotation
 
 Scientific name   JCM no.
 Symbiotaphrina buchneri   9740
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   29,779,121
Sequence coverage   166
# of contigs   211
Total length (contigs)   23,675,581
N50 (contigs)   443,652
# of scaffolds   169
Total scaffold length (with gaps)   23,712,134
% gaps   0.2
N50 (scaffold)   744,169
GC%   51.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Symbiotaphrina kochii
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   9,367
# of predicted transcript models   9,367
Average transcript length (bp)   1,582
Average coding length (bp)   1,423
Average protein length (aa)   474
Average number of exons per gene model   3.2
Average exon size (bp)   441
Average intron size (bp)   70
# of non-coding RNA   628
# of functionally annotated genes trembl   7,285
# of functionally annotated genes sprot   2,768
CEGMA complete (%)   98.39
CEGMA partial (%)   99.60

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