Summary of assembly and annotation
 
 Scientific name   JCM no.
 Pestalotiopsis sp.   9685
Genome assembly:
ALLPATHS-LG (ver. 51828)
Genome assembly ver. 001
Estimated genome size   53,093,854
Sequence coverage   187
# of contigs   135
Total length (contigs)   48,183,370
N50 (contigs)   653,539
# of scaffolds   13
Total scaffold length (with gaps)   48,230,023
% gaps   0.1
N50 (scaffold)   6,441,926
GC%   51.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Daldinia eschscholzii
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   14,987
# of predicted transcript models   14,987
Average transcript length (bp)   1,530
Average coding length (bp)   1,379
Average protein length (aa)   459
Average number of exons per gene model   2.7
Average exon size (bp)   513
Average intron size (bp)   87
# of non-coding RNA   398
# of functionally annotated genes trembl   13,232
# of functionally annotated genes sprot   3,202
CEGMA complete (%)   96.37
CEGMA partial (%)   97.58