Summary of assembly and annotation
 
 Scientific name   JCM no.
 Starmerella bombicola   9596
Genome assembly:
ALLPATHS-LG (ver. 51828)
Genome assembly ver. 001
Estimated genome size   10,785,253
Sequence coverage   238
# of contigs   63
Total length (contigs)   9,453,071
N50 (contigs)   662,740
# of scaffolds   16
Total scaffold length (with gaps)   9,561,028
% gaps   1.1
N50 (scaffold)   2,890,200
GC%   47.6
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Candida caseinolytica
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   4,870
# of predicted transcript models   4,870
Average transcript length (bp)   1,436
Average coding length (bp)   1,361
Average protein length (aa)   453
Average number of exons per gene model   1.1
Average exon size (bp)   1,276
Average intron size (bp)   1,093
# of non-coding RNA   188
# of functionally annotated genes trembl   2,753
# of functionally annotated genes sprot   1,900
CEGMA complete (%)   91.53
CEGMA partial (%)   92.74