Summary of assembly and annotation
 
 Scientific name   JCM no.
 Sporopachydermia quercuum   9486
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   17,992,392
Sequence coverage   151
# of contigs   37
Total length (contigs)   16,381,402
N50 (contigs)   852,576
# of scaffolds   15
Total scaffold length (with gaps)   16,411,463
% gaps   0.2
N50 (scaffold)   1,903,616
GC%   36.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Nadsonia fulvescens var. elongata
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,992
# of predicted transcript models   5,992
Average transcript length (bp)   1,592
Average coding length (bp)   1,490
Average protein length (aa)   496
Average number of exons per gene model   1.6
Average exon size (bp)   908
Average intron size (bp)   153
# of non-coding RNA   421
# of functionally annotated genes trembl   3,711
# of functionally annotated genes sprot   2,602
CEGMA complete (%)   95.97
CEGMA partial (%)   96.77

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