Summary of assembly and annotation
 
 Scientific name   JCM no.
 Wickerhamiella domercqiae   9478
Genome assembly:
ALLPATHS-LG (ver. 51828)
Genome assembly ver. 001
Estimated genome size   9,915,569
Sequence coverage   261
# of contigs   50
Total length (contigs)   8,380,940
N50 (contigs)   440,821
# of scaffolds   4
Total scaffold length (with gaps)   8,470,812
% gaps   1.1
N50 (scaffold)   2,224,469
GC%   48.4
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Candida caseinolytica
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   4,928
# of predicted transcript models   4,928
Average transcript length (bp)   1,362
Average coding length (bp)   1,335
Average protein length (aa)   445
Average number of exons per gene model   1.0
Average exon size (bp)   1,276
Average intron size (bp)   510
# of non-coding RNA   185
# of functionally annotated genes trembl   2,948
# of functionally annotated genes sprot   1,950
CEGMA complete (%)   93.15
CEGMA partial (%)   93.55

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