Summary of assembly and annotation
 
 Scientific name   JCM no.
 Trichoderma atroviride   9410
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   39,750,304
Sequence coverage   129
# of contigs   244
Total length (contigs)   36,961,169
N50 (contigs)   527,882
# of scaffolds   23
Total scaffold length (with gaps)   37,316,984
% gaps   1.0
N50 (scaffold)   5,619,901
GC%   48.5
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Trichoderma atroviride
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   12,533
# of predicted transcript models   12,533
Average transcript length (bp)   1,577
Average coding length (bp)   1,398
Average protein length (aa)   466
Average number of exons per gene model   2.7
Average exon size (bp)   514
Average intron size (bp)   102
# of non-coding RNA   444
# of functionally annotated genes trembl   11,134
# of functionally annotated genes sprot   2,866
CEGMA complete (%)   94.76
CEGMA partial (%)   96.77

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