Summary of assembly and annotation
 
 Scientific name   JCM no.
 Candida carpophila   9396
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   11,897,382
Sequence coverage   208
# of contigs   26
Total length (contigs)   10,232,804
N50 (contigs)   765,813
# of scaffolds   10
Total scaffold length (with gaps)   10,242,926
% gaps   0.1
N50 (scaffold)   1,643,132
GC%   47.4
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Meyerozyma guilliermondii
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   5,418
# of predicted transcript models   5,418
Average transcript length (bp)   1,559
Average coding length (bp)   1,521
Average protein length (aa)   507
Average number of exons per gene model   1.2
Average exon size (bp)   1,303
Average intron size (bp)   202
# of non-coding RNA   288
# of functionally annotated genes trembl   5,166
# of functionally annotated genes sprot   2,792
CEGMA complete (%)   96.37
CEGMA partial (%)   96.77