Summary of assembly and annotation
 
 Scientific name   JCM no.
 Phaeotremella skinneri   9039
Genome assembly:
ALLPATHS-LG (ver. 52155)
Genome assembly ver. 001
Estimated genome size   22,134,657
Sequence coverage   227
# of contigs   164
Total length (contigs)   20,508,427
N50 (contigs)   411,407
# of scaffolds   58
Total scaffold length (with gaps)   20,788,256
% gaps   1.3
N50 (scaffold)   1,003,985
GC%   50.2
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Cryptococcus neoformans
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   7,577
# of predicted transcript models   7,577
Average transcript length (bp)   2,035
Average coding length (bp)   1,595
Average protein length (aa)   531
Average number of exons per gene model   6.6
Average exon size (bp)   241
Average intron size (bp)   77
# of non-coding RNA   341
# of functionally annotated genes trembl   5,663
# of functionally annotated genes sprot   1,860
CEGMA complete (%)   92.74
CEGMA partial (%)   94.35