Summary of assembly and annotation
 
 Scientific name   JCM no.
 Didymobotryum rigidum   8837
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   55,654,957
Sequence coverage   129
# of contigs   183
Total length (contigs)   41,708,295
N50 (contigs)   434,326
# of scaffolds   31
Total scaffold length (with gaps)   41,729,728
% gaps   0.1
N50 (scaffold)   3,093,439
GC%   54.7
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Neurospora crassa
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   13,922
# of predicted transcript models   13,922
Average transcript length (bp)   1,529
Average coding length (bp)   1,335
Average protein length (aa)   445
Average number of exons per gene model   2.7
Average exon size (bp)   487
Average intron size (bp)   108
# of non-coding RNA   409
# of functionally annotated genes trembl   10,387
# of functionally annotated genes sprot   2,909
CEGMA complete (%)   93.15
CEGMA partial (%)   95.16