Summary of assembly and annotation
 
 Scientific name   JCM no.
 Endocalyx cinctus   7946
Genome assembly:
ALLPATHS-LG (ver. 52488)
Genome assembly ver. 001
Estimated genome size   48,243,336
Sequence coverage   207
# of contigs   182
Total length (contigs)   44,684,075
N50 (contigs)   439,610
# of scaffolds   17
Total scaffold length (with gaps)   44,773,950
% gaps   0.2
N50 (scaffold)   4,458,946
GC%   45.4
Gene prediction:
  MAKER annotation pipeline (release 2.31.8)
    Gene predictors used: Augustus (3.0.3), SNAP (2013-02-16), GeneMark-ES (Suite 4.21)
    Reference used: Coccidioides immitis
    tRNAscan-SE (version 1.23)
  Infernal cmscan (version 1.1.1)
    Database used: Rfam (Release 12.0)
Functional annotaion:
  Sma3S: 2013-09-01
    Database used: Uniprot-TrEMBL (release 2015_11), Uniprot-sprot (release 2015_11)
Gene prediction & funcational annotation ver. 001
# of predicted gene models   14,411
# of predicted transcript models   14,411
Average transcript length (bp)   1,636
Average coding length (bp)   1,387
Average protein length (aa)   462
Average number of exons per gene model   2.9
Average exon size (bp)   479
Average intron size (bp)   129
# of non-coding RNA   461
# of functionally annotated genes trembl   10,673
# of functionally annotated genes sprot   2,953
CEGMA complete (%)   95.16
CEGMA partial (%)   97.58

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